Viewing data for Trachypithecus obscurus


Scientific name Trachypithecus obscurus
Common name Dusky leaf monkey
Maximum lifespan 33.90 years (Trachypithecus obscurus@AnAge)

Total mtDNA (size: 16560 bases) GC AT G C A T
Base content (bases) 6411 10149 4284 2127 4853 5296
Base content per 1 kb (bases) 387 613 259 128 293 320
Base content (%) 38.7% 61.3%
Total protein-coding genes (size: 11341 bases) GC AT G C A T
Base content (bases) 4344 6997 3051 1293 3474 3523
Base content per 1 kb (bases) 383 617 269 114 306 311
Base content (%) 38.3% 61.7%
D-loop (size: 1093 bases) GC AT G C A T
Base content (bases) 451 642 305 146 317 325
Base content per 1 kb (bases) 413 587 279 134 290 297
Base content (%) 41.3% 58.7%
Total tRNA-coding genes (size: 1501 bases) GC AT G C A T
Base content (bases) 542 959 321 221 432 527
Base content per 1 kb (bases) 361 639 214 147 288 351
Base content (%) 36.1% 63.9%
Total rRNA-coding genes (size: 2512 bases) GC AT G C A T
Base content (bases) 1029 1483 578 451 599 884
Base content per 1 kb (bases) 410 590 230 180 238 352
Base content (%) 41.0% 59.0%
12S rRNA gene (size: 948 bases) GC AT G C A T
Base content (bases) 397 551 223 174 228 323
Base content per 1 kb (bases) 419 581 235 184 241 341
Base content (%) 41.9% 58.1%
16S rRNA gene (size: 1564 bases) GC AT G C A T
Base content (bases) 632 932 355 277 371 561
Base content per 1 kb (bases) 404 596 227 177 237 359
Base content (%) 40.4% 59.6%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 260 421 183 77 215 206
Base content per 1 kb (bases) 382 618 269 113 316 302
Base content (%) 38.2% 61.8%
ATP8 (size: 207 bases) GC AT G C A T
Base content (bases) 65 142 55 10 59 83
Base content per 1 kb (bases) 314 686 266 48 285 401
Base content (%) 31.4% 68.6%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 620 925 374 246 496 429
Base content per 1 kb (bases) 401 599 242 159 321 278
Base content (%) 40.1% 59.9%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 258 426 165 93 210 216
Base content per 1 kb (bases) 377 623 241 136 307 316
Base content (%) 37.7% 62.3%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 315 469 208 107 248 221
Base content per 1 kb (bases) 402 598 265 136 316 282
Base content (%) 40.2% 59.8%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 468 673 339 129 341 332
Base content per 1 kb (bases) 410 590 297 113 299 291
Base content (%) 41.0% 59.0%
ND1 (size: 957 bases) GC AT G C A T
Base content (bases) 391 566 276 115 288 278
Base content per 1 kb (bases) 409 591 288 120 301 290
Base content (%) 40.9% 59.1%
ND2 (size: 1044 bases) GC AT G C A T
Base content (bases) 382 662 298 84 304 358
Base content per 1 kb (bases) 366 634 285 80 291 343
Base content (%) 36.6% 63.4%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 123 223 87 36 113 110
Base content per 1 kb (bases) 355 645 251 104 327 318
Base content (%) 35.5% 64.5%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 510 868 373 137 438 430
Base content per 1 kb (bases) 370 630 271 99 318 312
Base content (%) 37.0% 63.0%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 103 194 68 35 109 85
Base content per 1 kb (bases) 347 653 229 118 367 286
Base content (%) 34.7% 65.3%
ND5 (size: 1806 bases) GC AT G C A T
Base content (bases) 677 1129 489 188 550 579
Base content per 1 kb (bases) 375 625 271 104 305 321
Base content (%) 37.5% 62.5%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 190 335 151 39 117 218
Base content per 1 kb (bases) 362 638 288 74 223 415
Base content (%) 36.2% 63.8%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.1%)
Alanine (Ala, A)
n = 17 (7.52%)
Serine (Ser, S)
n = 12 (5.31%)
Threonine (Thr, T)
n = 28 (12.39%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (5.75%)
Leucine (Leu, L)
n = 49 (21.68%)
Isoleucine (Ile, I)
n = 22 (9.73%)
Methionine (Met, M)
n = 10 (4.42%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 12 (5.31%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 2 (0.88%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 11 (4.87%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 7 (3.1%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 5 5 8 7 19 4 8 7 1 3 0 8 2 9 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 6 6 5 0 1 2 3 1 4 4 5 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 12 1 2 2 3 0 4 1 2 0 1 3 7 4 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 0 1 0 5 0 0 2 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
41 70 81 35
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
18 65 38 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 48 87 74
ATP8 (size: 207 bases)
Amino acid sequence: MPQLNTSTWFITIMTMLPALYLIMQLKLLNTNYYLPPTQKTPNTQMFNNSWQLKWTKIYLPHLQPQHS*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.47%)
Serine (Ser, S)
n = 3 (4.41%)
Threonine (Thr, T)
n = 9 (13.24%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 11 (16.18%)
Isoleucine (Ile, I)
n = 4 (5.88%)
Methionine (Met, M)
n = 5 (7.35%)
Proline (Pro, P)
n = 7 (10.29%)
Phenylalanine (Phe, F)
n = 2 (2.94%)
Tyrosine (Tyr, Y)
n = 4 (5.88%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 6 (8.82%)
Glutamine (Gln, Q)
n = 7 (10.29%)
Histidine (His, H)
n = 2 (2.94%)
Lysine (Lys, K)
n = 4 (5.88%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 0 3 2 0 4 0 4 7 0 0 0 0 0 2 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 0 1 0 0 0 0 0 3 3 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 4 2 2 1 0 0 0 0 2 2 1 1 3 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 0 0 0 4 0 0 0 0 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1 22 28 18
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
3 20 24 22
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 13 31 19
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 42 (8.17%)
Serine (Ser, S)
n = 32 (6.23%)
Threonine (Thr, T)
n = 33 (6.42%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 35 (6.81%)
Leucine (Leu, L)
n = 60 (11.67%)
Isoleucine (Ile, I)
n = 40 (7.78%)
Methionine (Met, M)
n = 31 (6.03%)
Proline (Pro, P)
n = 29 (5.64%)
Phenylalanine (Phe, F)
n = 42 (8.17%)
Tyrosine (Tyr, Y)
n = 20 (3.89%)
Tryptophan (Trp, W)
n = 16 (3.11%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 8 (1.56%)
Asparagine (Asn, N)
n = 18 (3.5%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.7%)
Lysine (Lys, K)
n = 11 (2.14%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 10 27 9 6 21 7 15 7 0 7 7 20 1 25 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 10 19 13 0 14 10 18 5 12 7 10 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 16 0 8 8 12 1 1 2 12 8 1 2 11 7 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
16 7 1 11 4 10 1 2 3 2 1 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
147 106 136 126
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
75 133 99 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 135 194 162
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 12 (5.29%)
Serine (Ser, S)
n = 13 (5.73%)
Threonine (Thr, T)
n = 20 (8.81%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 32 (14.1%)
Isoleucine (Ile, I)
n = 24 (10.57%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 9 (3.96%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 7 8 4 4 13 0 11 7 0 3 5 4 1 7 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 5 4 3 0 4 2 4 1 2 4 8 2 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 10 0 3 2 5 0 1 2 5 4 0 0 6 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 7 4 5 4 4 0 1 1 4 0 0 0 0 1 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
56 56 69 47
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 58 55 89
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 51 92 74
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 13 (5.0%)
Serine (Ser, S)
n = 19 (7.31%)
Threonine (Thr, T)
n = 25 (9.62%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 21 (8.08%)
Tyrosine (Tyr, Y)
n = 14 (5.38%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 7 9 7 5 10 0 12 8 0 4 6 3 1 10 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 4 4 5 0 3 8 7 1 4 3 6 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 12 0 3 4 6 1 2 3 8 6 2 0 4 1 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 5 2 2 1 3 0 2 1 2 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
56 65 66 74
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 65 57 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 78 98 76
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (5.54%)
Alanine (Ala, A)
n = 21 (5.54%)
Serine (Ser, S)
n = 28 (7.39%)
Threonine (Thr, T)
n = 33 (8.71%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 12 (3.17%)
Leucine (Leu, L)
n = 66 (17.41%)
Isoleucine (Ile, I)
n = 37 (9.76%)
Methionine (Met, M)
n = 15 (3.96%)
Proline (Pro, P)
n = 26 (6.86%)
Phenylalanine (Phe, F)
n = 23 (6.07%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 4 (1.06%)
Asparagine (Asn, N)
n = 20 (5.28%)
Glutamine (Gln, Q)
n = 9 (2.37%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 7 (1.85%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 15 12 12 14 25 2 12 6 3 2 2 6 2 9 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 2 7 12 0 8 6 7 0 3 9 12 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 11 1 7 10 7 0 0 4 4 10 1 1 12 8 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 0 4 5 9 0 1 2 4 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 106 118 89
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
47 104 76 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 129 138 98
ND1 (size: 957 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.09%)
Alanine (Ala, A)
n = 28 (8.81%)
Serine (Ser, S)
n = 22 (6.92%)
Threonine (Thr, T)
n = 32 (10.06%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 9 (2.83%)
Leucine (Leu, L)
n = 59 (18.55%)
Isoleucine (Ile, I)
n = 25 (7.86%)
Methionine (Met, M)
n = 17 (5.35%)
Proline (Pro, P)
n = 20 (6.29%)
Phenylalanine (Phe, F)
n = 20 (6.29%)
Tyrosine (Tyr, Y)
n = 11 (3.46%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 11 (3.46%)
Asparagine (Asn, N)
n = 13 (4.09%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 5 (1.57%)
Lysine (Lys, K)
n = 7 (2.2%)
Arginine (Arg, R)
n = 7 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 8 14 13 11 21 2 11 6 0 2 3 4 0 12 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 3 14 11 0 1 4 4 4 5 11 3 1 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 15 1 3 6 11 0 1 1 7 4 0 1 8 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 9 2 1 2 4 3 0 3 3 1 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 85 96 74
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 100 57 130
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 91 125 84
ND2 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.46%)
Alanine (Ala, A)
n = 17 (4.9%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 49 (14.12%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 59 (17.0%)
Isoleucine (Ile, I)
n = 32 (9.22%)
Methionine (Met, M)
n = 26 (7.49%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 10 (2.88%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 21 (6.05%)
Glutamine (Gln, Q)
n = 11 (3.17%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 3 (0.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 10 24 9 11 23 1 14 11 0 4 1 3 0 8 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 1 10 6 0 4 4 4 0 6 7 6 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 20 1 6 10 8 1 1 3 7 3 1 1 9 12 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 6 0 1 0 11 1 1 2 0 0 0 0 0 1 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
44 84 144 76
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 111 68 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 103 146 89
ND3 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.46%)
Alanine (Ala, A)
n = 17 (4.9%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 49 (14.12%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 59 (17.0%)
Isoleucine (Ile, I)
n = 32 (9.22%)
Methionine (Met, M)
n = 26 (7.49%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 10 (2.88%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 21 (6.05%)
Glutamine (Gln, Q)
n = 11 (3.17%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 3 (0.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 10 24 9 11 23 1 14 11 0 4 1 3 0 8 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 1 10 6 0 4 4 4 0 6 7 6 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 20 1 6 10 8 1 1 3 7 3 1 1 9 12 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 6 0 1 0 11 1 1 2 0 0 0 0 0 1 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
44 84 144 76
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 111 68 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 103 146 89
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (3.49%)
Alanine (Ala, A)
n = 28 (6.11%)
Serine (Ser, S)
n = 43 (9.39%)
Threonine (Thr, T)
n = 46 (10.04%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 12 (2.62%)
Leucine (Leu, L)
n = 87 (19.0%)
Isoleucine (Ile, I)
n = 36 (7.86%)
Methionine (Met, M)
n = 41 (8.95%)
Proline (Pro, P)
n = 21 (4.59%)
Phenylalanine (Phe, F)
n = 22 (4.8%)
Tyrosine (Tyr, Y)
n = 16 (3.49%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 24 (5.24%)
Glutamine (Gln, Q)
n = 9 (1.97%)
Histidine (His, H)
n = 12 (2.62%)
Lysine (Lys, K)
n = 9 (1.97%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 11 35 15 18 24 3 24 7 2 4 1 7 0 12 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 1 5 13 10 0 4 7 5 0 6 12 3 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 20 0 7 14 10 2 5 5 11 5 1 3 15 9 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 9 1 1 1 9 0 0 2 8 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 112 166 113
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 128 82 198
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 133 182 126
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 2 (2.04%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 4 (4.08%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 9 (9.18%)
Methionine (Met, M)
n = 10 (10.2%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 2 9 2 4 9 1 7 1 0 1 0 2 1 3 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 3 3 3 0 1 2 0 1 0 3 0 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 0 1 0 6 0 1 0 3 1 0 0 4 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 2 1 0 0 0 1 0 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
20 24 28 27
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 21 18 51
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 23 39 31
ND5 (size: 1806 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (4.49%)
Alanine (Ala, A)
n = 36 (5.99%)
Serine (Ser, S)
n = 43 (7.15%)
Threonine (Thr, T)
n = 59 (9.82%)
Cysteine (Cys, C)
n = 6 (1.0%)
Valine (Val, V)
n = 13 (2.16%)
Leucine (Leu, L)
n = 100 (16.64%)
Isoleucine (Ile, I)
n = 63 (10.48%)
Methionine (Met, M)
n = 40 (6.66%)
Proline (Pro, P)
n = 28 (4.66%)
Phenylalanine (Phe, F)
n = 39 (6.49%)
Tyrosine (Tyr, Y)
n = 16 (2.66%)
Tryptophan (Trp, W)
n = 12 (2.0%)
Aspartic acid (Asp, D)
n = 12 (2.0%)
Glutamic acid (Glu, E)
n = 9 (1.5%)
Asparagine (Asn, N)
n = 35 (5.82%)
Glutamine (Gln, Q)
n = 18 (3.0%)
Histidine (His, H)
n = 17 (2.83%)
Lysine (Lys, K)
n = 20 (3.33%)
Arginine (Arg, R)
n = 8 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
39 24 37 15 20 42 5 17 12 6 2 4 5 2 26 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 4 4 18 13 1 6 9 9 3 4 12 12 0 19
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 19 1 6 11 15 0 4 7 9 7 0 1 20 15 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 3 5 7 19 1 2 1 5 0 0 0 0 1 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
97 153 228 124
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
64 155 128 255
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 181 223 171
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.94%)
Alanine (Ala, A)
n = 10 (5.75%)
Serine (Ser, S)
n = 12 (6.9%)
Threonine (Thr, T)
n = 6 (3.45%)
Cysteine (Cys, C)
n = 1 (0.57%)
Valine (Val, V)
n = 23 (13.22%)
Leucine (Leu, L)
n = 23 (13.22%)
Isoleucine (Ile, I)
n = 14 (8.05%)
Methionine (Met, M)
n = 10 (5.75%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 9 (5.17%)
Tyrosine (Tyr, Y)
n = 11 (6.32%)
Tryptophan (Trp, W)
n = 5 (2.87%)
Aspartic acid (Asp, D)
n = 3 (1.72%)
Glutamic acid (Glu, E)
n = 10 (5.75%)
Asparagine (Asn, N)
n = 4 (2.3%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.57%)
Arginine (Arg, R)
n = 3 (1.72%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 1 5 0 0 2 0 15 0 0 12 1 6 4 9 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 0 2 1 4 3 12 2 6 6 3 0 0 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 4 0 2 0 6 0 10 1 4 6 4 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 7 3 0 0 1 2 0 1 0 0 1 0 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 8 42 53
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 25 29 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 6 46 86
Total protein-coding genes (size: 11395 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 206 (5.43%)
Alanine (Ala, A)
n = 242 (6.38%)
Serine (Ser, S)
n = 270 (7.11%)
Threonine (Thr, T)
n = 350 (9.22%)
Cysteine (Cys, C)
n = 22 (0.58%)
Valine (Val, V)
n = 159 (4.19%)
Leucine (Leu, L)
n = 629 (16.57%)
Isoleucine (Ile, I)
n = 334 (8.8%)
Methionine (Met, M)
n = 233 (6.14%)
Proline (Pro, P)
n = 206 (5.43%)
Phenylalanine (Phe, F)
n = 226 (5.95%)
Tyrosine (Tyr, Y)
n = 134 (3.53%)
Tryptophan (Trp, W)
n = 102 (2.69%)
Aspartic acid (Asp, D)
n = 62 (1.63%)
Glutamic acid (Glu, E)
n = 86 (2.27%)
Asparagine (Asn, N)
n = 177 (4.66%)
Glutamine (Gln, Q)
n = 93 (2.45%)
Histidine (His, H)
n = 105 (2.77%)
Lysine (Lys, K)
n = 89 (2.34%)
Arginine (Arg, R)
n = 63 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
231 103 195 97 104 228 26 155 81 12 44 31 70 14 138 88
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
38 7 15 50 100 88 4 59 56 68 23 56 77 67 6 87
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
112 144 7 52 71 88 5 26 28 81 53 13 19 106 71 40
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
65 64 22 36 26 80 9 12 18 31 2 0 1 4 4 89
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
755 922 1238 882
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
448 1014 754 1581
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
205 1018 1452 1122 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​r​a​c​h​y​p​i​t​h​e​c​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ o​b​s​c​u​r​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.