Viewing data for Martes foina
| Scientific name | Martes foina |
| Common name | Beech marten |
| Maximum lifespan | 18.20 years (Martes foina@AnAge) |
| Total mtDNA (size: 16530 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 6924 | 9606 | 4535 | 2389 | 4299 | 5307 |
| Base content per 1 kb (bases) | 419 | 581 | 274 | 145 | 260 | 321 |
| Base content (%) | 41.9% | 58.1% | ||||
| Total protein-coding genes (size: 11354 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4811 | 6543 | 3295 | 1516 | 3020 | 3523 |
| Base content per 1 kb (bases) | 424 | 576 | 290 | 134 | 266 | 310 |
| Base content (%) | 42.4% | 57.6% | ||||
| D-loop (size: 1087 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 488 | 599 | 326 | 162 | 276 | 323 |
| Base content per 1 kb (bases) | 449 | 551 | 300 | 149 | 254 | 297 |
| Base content (%) | 44.9% | 55.1% | ||||
| Total tRNA-coding genes (size: 1510 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 571 | 939 | 324 | 247 | 414 | 525 |
| Base content per 1 kb (bases) | 378 | 622 | 215 | 164 | 274 | 348 |
| Base content (%) | 37.8% | 62.2% | ||||
| Total rRNA-coding genes (size: 2530 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1029 | 1501 | 575 | 454 | 577 | 924 |
| Base content per 1 kb (bases) | 407 | 593 | 227 | 179 | 228 | 365 |
| Base content (%) | 40.7% | 59.3% | ||||
| 12S rRNA gene (size: 959 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 390 | 569 | 217 | 173 | 217 | 352 |
| Base content per 1 kb (bases) | 407 | 593 | 226 | 180 | 226 | 367 |
| Base content (%) | 40.7% | 59.3% | ||||
| 16S rRNA gene (size: 1571 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 639 | 932 | 358 | 281 | 360 | 572 |
| Base content per 1 kb (bases) | 407 | 593 | 228 | 179 | 229 | 364 |
| Base content (%) | 40.7% | 59.3% | ||||
| ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 287 | 394 | 203 | 84 | 189 | 205 |
| Base content per 1 kb (bases) | 421 | 579 | 298 | 123 | 278 | 301 |
| Base content (%) | 42.1% | 57.9% | ||||
| ATP8 (size: 204 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 66 | 138 | 50 | 16 | 61 | 77 |
| Base content per 1 kb (bases) | 324 | 676 | 245 | 78 | 299 | 377 |
| Base content (%) | 32.4% | 67.6% | ||||
| COX1 (size: 1545 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 670 | 875 | 394 | 276 | 447 | 428 |
| Base content per 1 kb (bases) | 434 | 566 | 255 | 179 | 289 | 277 |
| Base content (%) | 43.4% | 56.6% | ||||
| COX2 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 292 | 392 | 191 | 101 | 183 | 209 |
| Base content per 1 kb (bases) | 427 | 573 | 279 | 148 | 268 | 306 |
| Base content (%) | 42.7% | 57.3% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 357 | 427 | 238 | 119 | 213 | 214 |
| Base content per 1 kb (bases) | 455 | 545 | 304 | 152 | 272 | 273 |
| Base content (%) | 45.5% | 54.5% | ||||
| CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 526 | 614 | 360 | 166 | 299 | 315 |
| Base content per 1 kb (bases) | 461 | 539 | 316 | 146 | 262 | 276 |
| Base content (%) | 46.1% | 53.9% | ||||
| ND1 (size: 955 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 412 | 543 | 293 | 119 | 257 | 286 |
| Base content per 1 kb (bases) | 431 | 569 | 307 | 125 | 269 | 299 |
| Base content (%) | 43.1% | 56.9% | ||||
| ND2 (size: 1042 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 406 | 636 | 296 | 110 | 264 | 372 |
| Base content per 1 kb (bases) | 390 | 610 | 284 | 106 | 253 | 357 |
| Base content (%) | 39.0% | 61.0% | ||||
| ND3 (size: 348 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 147 | 201 | 96 | 51 | 97 | 104 |
| Base content per 1 kb (bases) | 422 | 578 | 276 | 147 | 279 | 299 |
| Base content (%) | 42.2% | 57.8% | ||||
| ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 581 | 797 | 412 | 169 | 361 | 436 |
| Base content per 1 kb (bases) | 422 | 578 | 299 | 123 | 262 | 316 |
| Base content (%) | 42.2% | 57.8% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 127 | 170 | 86 | 41 | 91 | 79 |
| Base content per 1 kb (bases) | 428 | 572 | 290 | 138 | 306 | 266 |
| Base content (%) | 42.8% | 57.2% | ||||
| ND5 (size: 1830 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 752 | 1078 | 538 | 214 | 478 | 600 |
| Base content per 1 kb (bases) | 411 | 589 | 294 | 117 | 261 | 328 |
| Base content (%) | 41.1% | 58.9% | ||||
| ND6 (size: 534 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 210 | 324 | 153 | 57 | 103 | 221 |
| Base content per 1 kb (bases) | 393 | 607 | 287 | 107 | 193 | 414 |
| Base content (%) | 39.3% | 60.7% | ||||
| ATP6 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%) 
Alanine (Ala, A)
n = 14 (6.19%) 
Serine (Ser, S)
n = 15 (6.64%) 
Threonine (Thr, T)
n = 24 (10.62%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 13 (5.75%) 
Leucine (Leu, L)
n = 41 (18.14%) 
Isoleucine (Ile, I)
n = 26 (11.5%) 
Methionine (Met, M)
n = 12 (5.31%) 
Proline (Pro, P)
n = 13 (5.75%) 
Phenylalanine (Phe, F)
n = 12 (5.31%) 
Tyrosine (Tyr, Y)
n = 2 (0.88%) 
Tryptophan (Trp, W)
n = 3 (1.33%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 3 (1.33%) 
Asparagine (Asn, N)
n = 11 (4.87%) 
Glutamine (Gln, Q)
n = 10 (4.42%) 
Histidine (His, H)
n = 7 (3.1%) 
Lysine (Lys, K)
n = 4 (1.77%) 
Arginine (Arg, R)
n = 4 (1.77%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 15 | 7 | 3 | 5 | 18 | 5 | 9 | 9 | 1 | 0 | 4 | 8 | 1 | 5 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 0 | 3 | 7 | 3 | 1 | 0 | 6 | 4 | 1 | 3 | 5 | 5 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 8 | 9 | 0 | 4 | 4 | 3 | 0 | 3 | 1 | 0 | 2 | 2 | 1 | 3 | 8 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 2 | 1 | 1 | 0 | 3 | 1 | 0 | 0 | 3 | 1 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 42 | 65 | 81 | 39 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 22 | 62 | 39 | 104 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 20 | 76 | 85 | 46 | ||||||||||||
| ATP8 (size: 204 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLDTSTWFITILSMIITLFFMFQLKVLKYNFPENPEPKLMSVSKSTTPWEKKWTKIYSPLSLPLQ* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 7 (10.45%)
Threonine (Thr, T)
n = 7 (10.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (2.99%)
Leucine (Leu, L)
n = 9 (13.43%)
Isoleucine (Ile, I)
n = 5 (7.46%)
Methionine (Met, M)
n = 4 (5.97%)
Proline (Pro, P)
n = 7 (10.45%)
Phenylalanine (Phe, F)
n = 5 (7.46%)
Tyrosine (Tyr, Y)
n = 2 (2.99%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 3 (4.48%)
Asparagine (Asn, N)
n = 2 (2.99%)
Glutamine (Gln, Q)
n = 3 (4.48%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 7 (10.45%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 3 | 2 | 3 | 2 | 0 | 4 | 2 | 1 | 2 | 1 | 0 | 0 | 2 | 0 | 3 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 3 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 2 | 1 | 2 | 1 | 4 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 1 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 3 | 0 | 0 | 1 | 5 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 6 | 18 | 25 | 19 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 3 | 21 | 19 | 25 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 7 | 11 | 33 | 17 | ||||||||||||
| COX1 (size: 1545 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 39 (7.59%)
Serine (Ser, S)
n = 32 (6.23%)
Threonine (Thr, T)
n = 38 (7.39%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 38 (7.39%)
Leucine (Leu, L)
n = 60 (11.67%)
Isoleucine (Ile, I)
n = 38 (7.39%)
Methionine (Met, M)
n = 32 (6.23%)
Proline (Pro, P)
n = 28 (5.45%)
Phenylalanine (Phe, F)
n = 42 (8.17%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 23 | 15 | 20 | 4 | 10 | 22 | 7 | 15 | 4 | 2 | 4 | 6 | 23 | 5 | 18 | 24 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 12 | 1 | 0 | 6 | 11 | 21 | 1 | 10 | 13 | 17 | 7 | 7 | 11 | 9 | 1 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 16 | 5 | 6 | 8 | 11 | 4 | 0 | 3 | 8 | 11 | 3 | 2 | 9 | 8 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 15 | 8 | 2 | 5 | 10 | 9 | 0 | 1 | 1 | 6 | 0 | 0 | 0 | 1 | 0 | 14 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 149 | 103 | 137 | 126 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 76 | 134 | 95 | 210 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 51 | 157 | 196 | 111 | ||||||||||||
| COX2 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 9 (3.96%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 17 (7.49%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 12 (5.29%)
Leucine (Leu, L)
n = 35 (15.42%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 16 (7.05%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 6 (2.64%)
Tyrosine (Tyr, Y)
n = 10 (4.41%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 6 (2.64%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 6 (2.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 8 | 13 | 5 | 6 | 11 | 4 | 8 | 5 | 2 | 5 | 0 | 5 | 2 | 0 | 6 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 1 | 2 | 5 | 1 | 1 | 2 | 2 | 3 | 1 | 5 | 4 | 4 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 2 | 2 | 4 | 5 | 5 | 1 | 2 | 2 | 1 | 9 | 1 | 1 | 1 | 5 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 12 | 3 | 3 | 7 | 5 | 0 | 2 | 1 | 2 | 1 | 0 | 0 | 1 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 54 | 60 | 66 | 48 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 54 | 62 | 87 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 22 | 77 | 81 | 48 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 13 (5.0%)
Serine (Ser, S)
n = 21 (8.08%)
Threonine (Thr, T)
n = 26 (10.0%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 12 (4.62%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 8 (3.08%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 6 | 8 | 6 | 4 | 12 | 5 | 6 | 7 | 0 | 4 | 6 | 6 | 0 | 3 | 22 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 1 | 4 | 5 | 4 | 0 | 2 | 8 | 8 | 2 | 2 | 3 | 6 | 1 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 13 | 1 | 5 | 5 | 7 | 0 | 2 | 2 | 2 | 8 | 3 | 0 | 1 | 7 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 6 | 2 | 0 | 3 | 2 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 60 | 67 | 62 | 72 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 43 | 68 | 54 | 96 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 16 | 103 | 98 | 44 | ||||||||||||
| CYTB (size: 1140 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 28 (7.39%)
Serine (Ser, S)
n = 26 (6.86%)
Threonine (Thr, T)
n = 24 (6.33%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 15 (3.96%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 42 (11.08%)
Methionine (Met, M)
n = 12 (3.17%)
Proline (Pro, P)
n = 24 (6.33%)
Phenylalanine (Phe, F)
n = 27 (7.12%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 29 | 8 | 7 | 9 | 24 | 8 | 9 | 4 | 2 | 3 | 4 | 8 | 0 | 5 | 22 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 4 | 5 | 14 | 9 | 0 | 4 | 5 | 11 | 4 | 1 | 9 | 14 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 7 | 3 | 2 | 10 | 6 | 4 | 0 | 4 | 5 | 9 | 0 | 1 | 3 | 14 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 4 | 2 | 2 | 9 | 9 | 0 | 1 | 1 | 5 | 1 | 1 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 84 | 98 | 109 | 89 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 53 | 98 | 75 | 154 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 29 | 164 | 131 | 56 | ||||||||||||
| ND1 (size: 955 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 29 (9.15%)
Serine (Ser, S)
n = 20 (6.31%)
Threonine (Thr, T)
n = 25 (7.89%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 16 (5.05%)
Leucine (Leu, L)
n = 59 (18.61%)
Isoleucine (Ile, I)
n = 25 (7.89%)
Methionine (Met, M)
n = 19 (5.99%)
Proline (Pro, P)
n = 22 (6.94%)
Phenylalanine (Phe, F)
n = 18 (5.68%)
Tyrosine (Tyr, Y)
n = 13 (4.1%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 12 (3.79%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 3 (0.95%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 8 (2.52%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 15 | 17 | 3 | 9 | 35 | 6 | 4 | 6 | 0 | 1 | 6 | 9 | 0 | 7 | 11 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 0 | 5 | 14 | 10 | 0 | 1 | 6 | 5 | 0 | 6 | 9 | 7 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 12 | 1 | 2 | 7 | 9 | 0 | 1 | 1 | 6 | 7 | 2 | 2 | 3 | 9 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 8 | 3 | 1 | 2 | 7 | 0 | 2 | 1 | 5 | 0 | 0 | 0 | 0 | 0 | 7 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 71 | 92 | 90 | 65 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 32 | 94 | 55 | 137 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 16 | 107 | 141 | 54 | ||||||||||||
| ND2 (size: 1042 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.62%)
Alanine (Ala, A)
n = 20 (5.78%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 37 (10.69%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 12 (3.47%)
Leucine (Leu, L)
n = 56 (16.18%)
Isoleucine (Ile, I)
n = 31 (8.96%)
Methionine (Met, M)
n = 45 (13.01%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 15 (4.34%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 5 (1.45%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 22 | 40 | 4 | 10 | 29 | 3 | 8 | 7 | 1 | 1 | 5 | 6 | 0 | 4 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 0 | 2 | 9 | 9 | 0 | 0 | 5 | 10 | 1 | 4 | 7 | 9 | 1 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 15 | 16 | 2 | 1 | 8 | 11 | 4 | 0 | 4 | 2 | 6 | 2 | 2 | 6 | 9 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 3 | 2 | 1 | 0 | 13 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 54 | 83 | 145 | 65 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 33 | 102 | 55 | 157 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 23 | 111 | 172 | 41 | ||||||||||||
| ND3 (size: 1042 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.62%)
Alanine (Ala, A)
n = 20 (5.78%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 37 (10.69%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 12 (3.47%)
Leucine (Leu, L)
n = 56 (16.18%)
Isoleucine (Ile, I)
n = 31 (8.96%)
Methionine (Met, M)
n = 45 (13.01%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 15 (4.34%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 5 (1.45%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 22 | 40 | 4 | 10 | 29 | 3 | 8 | 7 | 1 | 1 | 5 | 6 | 0 | 4 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 0 | 2 | 9 | 9 | 0 | 0 | 5 | 10 | 1 | 4 | 7 | 9 | 1 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 15 | 16 | 2 | 1 | 8 | 11 | 4 | 0 | 4 | 2 | 6 | 2 | 2 | 6 | 9 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 3 | 2 | 1 | 0 | 13 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 54 | 83 | 145 | 65 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 33 | 102 | 55 | 157 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 23 | 111 | 172 | 41 | ||||||||||||
| ND4 (size: 1378 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 31 (6.77%)
Serine (Ser, S)
n = 34 (7.42%)
Threonine (Thr, T)
n = 40 (8.73%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 14 (3.06%)
Leucine (Leu, L)
n = 98 (21.4%)
Isoleucine (Ile, I)
n = 41 (8.95%)
Methionine (Met, M)
n = 34 (7.42%)
Proline (Pro, P)
n = 21 (4.59%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 17 (3.71%)
Tryptophan (Trp, W)
n = 14 (3.06%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 22 (4.8%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 10 (2.18%)
Lysine (Lys, K)
n = 13 (2.84%)
Arginine (Arg, R)
n = 10 (2.18%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 17 | 24 | 26 | 11 | 13 | 44 | 12 | 16 | 9 | 2 | 1 | 2 | 9 | 2 | 6 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 8 | 1 | 2 | 4 | 13 | 13 | 1 | 1 | 7 | 8 | 2 | 3 | 11 | 7 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 14 | 17 | 5 | 4 | 12 | 8 | 1 | 1 | 8 | 3 | 14 | 2 | 2 | 4 | 18 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 7 | 1 | 0 | 4 | 11 | 2 | 2 | 3 | 5 | 0 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 75 | 132 | 159 | 93 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 54 | 117 | 85 | 203 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 40 | 163 | 192 | 64 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 7 (7.14%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 6 (6.12%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 7 (7.14%)
Methionine (Met, M)
n = 10 (10.2%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 3 | 4 | 6 | 4 | 3 | 9 | 3 | 3 | 2 | 0 | 1 | 1 | 2 | 2 | 1 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 2 | 1 | 2 | 3 | 2 | 0 | 0 | 1 | 2 | 1 | 0 | 1 | 0 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 4 | 0 | 0 | 8 | 0 | 0 | 1 | 0 | 2 | 1 | 0 | 0 | 1 | 4 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 0 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 20 | 26 | 30 | 23 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 9 | 23 | 17 | 50 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 12 | 37 | 32 | 18 | ||||||||||||
| ND5 (size: 1830 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 28 (4.6%)
Alanine (Ala, A)
n = 38 (6.24%)
Serine (Ser, S)
n = 49 (8.05%)
Threonine (Thr, T)
n = 53 (8.7%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 18 (2.96%)
Leucine (Leu, L)
n = 88 (14.45%)
Isoleucine (Ile, I)
n = 61 (10.02%)
Methionine (Met, M)
n = 46 (7.55%)
Proline (Pro, P)
n = 24 (3.94%)
Phenylalanine (Phe, F)
n = 47 (7.72%)
Tyrosine (Tyr, Y)
n = 17 (2.79%)
Tryptophan (Trp, W)
n = 12 (1.97%)
Aspartic acid (Asp, D)
n = 13 (2.13%)
Glutamic acid (Glu, E)
n = 11 (1.81%)
Asparagine (Asn, N)
n = 28 (4.6%)
Glutamine (Gln, Q)
n = 20 (3.28%)
Histidine (His, H)
n = 17 (2.79%)
Lysine (Lys, K)
n = 26 (4.27%)
Arginine (Arg, R)
n = 9 (1.48%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 17 | 44 | 41 | 6 | 18 | 40 | 11 | 11 | 14 | 6 | 4 | 3 | 11 | 0 | 17 | 30 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 1 | 3 | 5 | 17 | 15 | 1 | 4 | 6 | 15 | 3 | 3 | 14 | 7 | 0 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 22 | 20 | 2 | 5 | 11 | 15 | 4 | 1 | 13 | 6 | 11 | 0 | 2 | 4 | 24 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 6 | 5 | 2 | 11 | 26 | 0 | 1 | 3 | 5 | 0 | 0 | 0 | 1 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 108 | 145 | 228 | 129 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 67 | 150 | 133 | 260 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 39 | 243 | 239 | 89 | ||||||||||||
| ND6 (size: 534 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.56%)
Alanine (Ala, A)
n = 10 (5.65%)
Serine (Ser, S)
n = 14 (7.91%)
Threonine (Thr, T)
n = 9 (5.08%)
Cysteine (Cys, C)
n = 2 (1.13%)
Valine (Val, V)
n = 26 (14.69%)
Leucine (Leu, L)
n = 21 (11.86%)
Isoleucine (Ile, I)
n = 14 (7.91%)
Methionine (Met, M)
n = 7 (3.95%)
Proline (Pro, P)
n = 3 (1.69%)
Phenylalanine (Phe, F)
n = 12 (6.78%)
Tyrosine (Tyr, Y)
n = 9 (5.08%)
Tryptophan (Trp, W)
n = 4 (2.26%)
Aspartic acid (Asp, D)
n = 5 (2.82%)
Glutamic acid (Glu, E)
n = 8 (4.52%)
Asparagine (Asn, N)
n = 3 (1.69%)
Glutamine (Gln, Q)
n = 1 (0.56%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (2.26%)
Arginine (Arg, R)
n = 1 (0.56%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 1 | 1 | 4 | 0 | 3 | 1 | 6 | 1 | 0 | 16 | 1 | 5 | 4 | 9 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 2 | 0 | 6 | 2 | 0 | 2 | 10 | 1 | 2 | 11 | 3 | 0 | 0 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 1 | 2 | 5 | 0 | 3 | 0 | 4 | 2 | 7 | 2 | 3 | 7 | 2 | 1 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 2 | 6 | 4 | 1 | 3 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 73 | 13 | 43 | 49 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 37 | 30 | 31 | 80 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 43 | 14 | 29 | 92 | ||||||||||||
| Total protein-coding genes (size: 11422 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 215 (5.65%)
Alanine (Ala, A)
n = 250 (6.57%)
Serine (Ser, S)
n = 283 (7.44%)
Threonine (Thr, T)
n = 312 (8.2%)
Cysteine (Cys, C)
n = 23 (0.6%)
Valine (Val, V)
n = 191 (5.02%)
Leucine (Leu, L)
n = 608 (15.98%)
Isoleucine (Ile, I)
n = 329 (8.65%)
Methionine (Met, M)
n = 251 (6.6%)
Proline (Pro, P)
n = 195 (5.12%)
Phenylalanine (Phe, F)
n = 235 (6.18%)
Tyrosine (Tyr, Y)
n = 127 (3.34%)
Tryptophan (Trp, W)
n = 105 (2.76%)
Aspartic acid (Asp, D)
n = 70 (1.84%)
Glutamic acid (Glu, E)
n = 98 (2.58%)
Asparagine (Asn, N)
n = 151 (3.97%)
Glutamine (Gln, Q)
n = 89 (2.34%)
Histidine (His, H)
n = 99 (2.6%)
Lysine (Lys, K)
n = 102 (2.68%)
Arginine (Arg, R)
n = 64 (1.68%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 141 | 188 | 193 | 62 | 89 | 266 | 72 | 98 | 71 | 18 | 40 | 39 | 96 | 16 | 78 | 157 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 58 | 11 | 12 | 46 | 102 | 93 | 9 | 35 | 61 | 86 | 33 | 42 | 77 | 73 | 3 | 54 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 112 | 122 | 24 | 40 | 83 | 85 | 18 | 15 | 42 | 45 | 82 | 18 | 21 | 41 | 110 | 21 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 78 | 69 | 29 | 19 | 51 | 95 | 7 | 10 | 12 | 39 | 3 | 1 | 0 | 7 | 1 | 87 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 824 | 936 | 1203 | 843 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 465 | 983 | 744 | 1614 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 330 | 1295 | 1481 | 700 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​M​a​r​t​e​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ f​o​i​n​a​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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