Viewing data for Pygathrix nemaeus


Scientific name Pygathrix nemaeus
Common name Douc langur
Maximum lifespan 26.00 years (Pygathrix nemaeus@AnAge)

Total mtDNA (size: 15467 bases) GC AT G C A T
Base content (bases) 5984 9483 4003 1981 4450 5033
Base content per 1 kb (bases) 387 613 259 128 288 325
Base content (%) 38.7% 61.3%
Total protein-coding genes (size: 11341 bases) GC AT G C A T
Base content (bases) 4373 6968 3077 1296 3389 3579
Base content per 1 kb (bases) 386 614 271 114 299 316
Base content (%) 38.6% 61.4%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1516 bases) GC AT G C A T
Base content (bases) 566 950 335 231 423 527
Base content per 1 kb (bases) 373 627 221 152 279 348
Base content (%) 37.3% 62.7%
Total rRNA-coding genes (size: 2510 bases) GC AT G C A T
Base content (bases) 1015 1495 571 444 608 887
Base content per 1 kb (bases) 404 596 227 177 242 353
Base content (%) 40.4% 59.6%
12S rRNA gene (size: 948 bases) GC AT G C A T
Base content (bases) 385 563 217 168 233 330
Base content per 1 kb (bases) 406 594 229 177 246 348
Base content (%) 40.6% 59.4%
16S rRNA gene (size: 1562 bases) GC AT G C A T
Base content (bases) 630 932 354 276 375 557
Base content per 1 kb (bases) 403 597 227 177 240 357
Base content (%) 40.3% 59.7%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 249 432 181 68 207 225
Base content per 1 kb (bases) 366 634 266 100 304 330
Base content (%) 36.6% 63.4%
ATP8 (size: 207 bases) GC AT G C A T
Base content (bases) 70 137 56 14 59 78
Base content per 1 kb (bases) 338 662 271 68 285 377
Base content (%) 33.8% 66.2%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 623 922 376 247 501 421
Base content per 1 kb (bases) 403 597 243 160 324 272
Base content (%) 40.3% 59.7%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 262 422 164 98 210 212
Base content per 1 kb (bases) 383 617 240 143 307 310
Base content (%) 38.3% 61.7%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 325 459 214 111 242 217
Base content per 1 kb (bases) 415 585 273 142 309 277
Base content (%) 41.5% 58.5%
CYTB (size: 1135 bases) GC AT G C A T
Base content (bases) 447 688 319 128 343 345
Base content per 1 kb (bases) 394 606 281 113 302 304
Base content (%) 39.4% 60.6%
ND1 (size: 957 bases) GC AT G C A T
Base content (bases) 395 562 289 106 273 289
Base content per 1 kb (bases) 413 587 302 111 285 302
Base content (%) 41.3% 58.7%
ND2 (size: 1044 bases) GC AT G C A T
Base content (bases) 380 664 292 88 296 368
Base content per 1 kb (bases) 364 636 280 84 284 352
Base content (%) 36.4% 63.6%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 132 214 93 39 109 105
Base content per 1 kb (bases) 382 618 269 113 315 303
Base content (%) 38.2% 61.8%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 513 865 377 136 426 439
Base content per 1 kb (bases) 372 628 274 99 309 319
Base content (%) 37.2% 62.8%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 113 184 78 35 97 87
Base content per 1 kb (bases) 380 620 263 118 327 293
Base content (%) 38.0% 62.0%
ND5 (size: 1812 bases) GC AT G C A T
Base content (bases) 688 1124 493 195 536 588
Base content per 1 kb (bases) 380 620 272 108 296 325
Base content (%) 38.0% 62.0%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 193 332 158 35 106 226
Base content per 1 kb (bases) 368 632 301 67 202 430
Base content (%) 36.8% 63.2%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 15 (6.64%)
Serine (Ser, S)
n = 15 (6.64%)
Threonine (Thr, T)
n = 26 (11.5%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (6.19%)
Leucine (Leu, L)
n = 49 (21.68%)
Isoleucine (Ile, I)
n = 23 (10.18%)
Methionine (Met, M)
n = 12 (5.31%)
Proline (Pro, P)
n = 12 (5.31%)
Phenylalanine (Phe, F)
n = 9 (3.98%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 2 (0.88%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 10 (4.42%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 7 (3.1%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 3 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 7 10 9 4 25 0 10 8 1 2 1 10 1 7 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 3 7 4 1 2 1 4 1 4 3 5 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 12 1 2 2 6 0 2 3 2 1 1 1 7 3 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 3 0 0 1 5 0 0 2 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
41 69 81 36
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
18 63 39 107
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 49 105 64
ATP8 (size: 207 bases)
Amino acid sequence: MPQLNTSTWLITIMTMLPALYLIMQLKLLNMVYYFPPSQKVSSTQMFNNPWQLKWTKIYLPHLHTQHS*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.47%)
Serine (Ser, S)
n = 5 (7.35%)
Threonine (Thr, T)
n = 7 (10.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (2.94%)
Leucine (Leu, L)
n = 11 (16.18%)
Isoleucine (Ile, I)
n = 4 (5.88%)
Methionine (Met, M)
n = 6 (8.82%)
Proline (Pro, P)
n = 6 (8.82%)
Phenylalanine (Phe, F)
n = 2 (2.94%)
Tyrosine (Tyr, Y)
n = 4 (5.88%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 4 (5.88%)
Glutamine (Gln, Q)
n = 6 (8.82%)
Histidine (His, H)
n = 3 (4.41%)
Lysine (Lys, K)
n = 4 (5.88%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 0 4 0 1 7 0 3 6 0 0 2 0 0 1 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 0 1 0 0 0 0 0 2 3 0 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 2 2 1 1 0 1 0 3 1 1 0 2 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 0 0 0 0 4 0 0 0 0 0 0 0 0 1 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
3 23 26 17
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 18 22 25
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 15 30 17
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 39 (7.59%)
Serine (Ser, S)
n = 32 (6.23%)
Threonine (Thr, T)
n = 33 (6.42%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 34 (6.61%)
Leucine (Leu, L)
n = 61 (11.87%)
Isoleucine (Ile, I)
n = 43 (8.37%)
Methionine (Met, M)
n = 30 (5.84%)
Proline (Pro, P)
n = 30 (5.84%)
Phenylalanine (Phe, F)
n = 43 (8.37%)
Tyrosine (Tyr, Y)
n = 20 (3.89%)
Tryptophan (Trp, W)
n = 16 (3.11%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 9 (1.75%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 19 (3.7%)
Lysine (Lys, K)
n = 11 (2.14%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 15 25 7 8 24 1 17 2 4 11 7 15 1 23 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 0 14 12 12 1 7 17 19 4 11 6 13 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 16 0 7 12 8 1 1 3 15 5 1 4 10 7 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 7 2 4 11 8 3 3 2 3 0 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
144 103 138 130
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 130 98 211
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 143 185 160
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 12 (5.29%)
Serine (Ser, S)
n = 12 (5.29%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 30 (13.22%)
Isoleucine (Ile, I)
n = 23 (10.13%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 9 (3.96%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 7 8 2 4 7 3 14 5 2 5 4 4 1 7 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 5 4 3 0 1 3 4 3 7 1 9 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 9 2 3 3 4 0 1 1 4 5 1 0 7 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 10 1 6 3 4 0 1 2 3 0 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 52 69 50
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 60 56 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 52 87 73
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 13 (5.0%)
Serine (Ser, S)
n = 21 (8.08%)
Threonine (Thr, T)
n = 27 (10.38%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 20 (7.69%)
Tyrosine (Tyr, Y)
n = 14 (5.38%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 9 8 5 4 14 4 6 7 1 7 2 4 0 13 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 0 6 5 2 0 5 6 7 1 1 6 5 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 12 0 4 3 8 1 2 3 9 5 1 0 3 2 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 4 3 3 0 3 0 2 1 2 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 70 67 69
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 69 57 93
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 75 93 79
CYTB (size: 1135 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (5.84%)
Alanine (Ala, A)
n = 19 (5.04%)
Serine (Ser, S)
n = 28 (7.43%)
Threonine (Thr, T)
n = 26 (6.9%)
Cysteine (Cys, C)
n = 3 (0.8%)
Valine (Val, V)
n = 15 (3.98%)
Leucine (Leu, L)
n = 62 (16.45%)
Isoleucine (Ile, I)
n = 39 (10.34%)
Methionine (Met, M)
n = 21 (5.57%)
Proline (Pro, P)
n = 26 (6.9%)
Phenylalanine (Phe, F)
n = 24 (6.37%)
Tyrosine (Tyr, Y)
n = 14 (3.71%)
Tryptophan (Trp, W)
n = 11 (2.92%)
Aspartic acid (Asp, D)
n = 8 (2.12%)
Glutamic acid (Glu, E)
n = 4 (1.06%)
Asparagine (Asn, N)
n = 20 (5.31%)
Glutamine (Gln, Q)
n = 9 (2.39%)
Histidine (His, H)
n = 11 (2.92%)
Lysine (Lys, K)
n = 9 (2.39%)
Arginine (Arg, R)
n = 7 (1.86%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 23 19 15 8 22 2 14 7 2 4 1 9 1 9 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 2 7 10 0 6 7 7 2 4 6 16 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 12 1 6 9 9 0 1 3 7 7 2 1 8 12 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 0 3 5 9 0 0 3 4 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 100 119 91
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
47 95 75 161
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 124 151 90
ND1 (size: 957 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.09%)
Alanine (Ala, A)
n = 28 (8.81%)
Serine (Ser, S)
n = 23 (7.23%)
Threonine (Thr, T)
n = 31 (9.75%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 8 (2.52%)
Leucine (Leu, L)
n = 62 (19.5%)
Isoleucine (Ile, I)
n = 23 (7.23%)
Methionine (Met, M)
n = 18 (5.66%)
Proline (Pro, P)
n = 20 (6.29%)
Phenylalanine (Phe, F)
n = 19 (5.97%)
Tyrosine (Tyr, Y)
n = 12 (3.77%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 11 (3.46%)
Asparagine (Asn, N)
n = 13 (4.09%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 7 (2.2%)
Arginine (Arg, R)
n = 7 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 9 17 12 14 26 2 8 6 0 2 2 3 1 6 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 4 12 11 1 2 4 6 1 5 11 4 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 16 0 3 6 11 0 1 2 6 6 1 0 9 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 9 2 2 1 7 0 1 1 5 0 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 91 95 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 99 57 130
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 99 137 73
ND2 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.75%)
Alanine (Ala, A)
n = 17 (4.9%)
Serine (Ser, S)
n = 28 (8.07%)
Threonine (Thr, T)
n = 46 (13.26%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (1.15%)
Leucine (Leu, L)
n = 60 (17.29%)
Isoleucine (Ile, I)
n = 29 (8.36%)
Methionine (Met, M)
n = 35 (10.09%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 15 (4.32%)
Tyrosine (Tyr, Y)
n = 12 (3.46%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 22 (6.34%)
Glutamine (Gln, Q)
n = 11 (3.17%)
Histidine (His, H)
n = 3 (0.86%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 12 33 10 11 27 4 8 10 1 3 1 0 0 5 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 4 6 7 0 2 6 4 1 5 6 9 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 20 2 5 7 10 1 3 2 9 3 1 0 14 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 1 0 0 10 2 1 2 1 0 0 0 0 1 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
39 90 149 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 106 66 143
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 96 153 83
ND3 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.75%)
Alanine (Ala, A)
n = 17 (4.9%)
Serine (Ser, S)
n = 28 (8.07%)
Threonine (Thr, T)
n = 46 (13.26%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (1.15%)
Leucine (Leu, L)
n = 60 (17.29%)
Isoleucine (Ile, I)
n = 29 (8.36%)
Methionine (Met, M)
n = 35 (10.09%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 15 (4.32%)
Tyrosine (Tyr, Y)
n = 12 (3.46%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 22 (6.34%)
Glutamine (Gln, Q)
n = 11 (3.17%)
Histidine (His, H)
n = 3 (0.86%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 12 33 10 11 27 4 8 10 1 3 1 0 0 5 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 4 6 7 0 2 6 4 1 5 6 9 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 20 2 5 7 10 1 3 2 9 3 1 0 14 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 1 0 0 10 2 1 2 1 0 0 0 0 1 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
39 90 149 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 106 66 143
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 96 153 83
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (3.49%)
Alanine (Ala, A)
n = 26 (5.68%)
Serine (Ser, S)
n = 42 (9.17%)
Threonine (Thr, T)
n = 42 (9.17%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 10 (2.18%)
Leucine (Leu, L)
n = 87 (19.0%)
Isoleucine (Ile, I)
n = 42 (9.17%)
Methionine (Met, M)
n = 40 (8.73%)
Proline (Pro, P)
n = 24 (5.24%)
Phenylalanine (Phe, F)
n = 22 (4.8%)
Tyrosine (Tyr, Y)
n = 13 (2.84%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 23 (5.02%)
Glutamine (Gln, Q)
n = 9 (1.97%)
Histidine (His, H)
n = 16 (3.49%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
29 13 36 16 14 27 5 25 9 0 2 1 5 2 11 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 8 11 7 0 2 8 4 2 9 9 6 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 24 0 8 12 8 2 2 10 8 5 2 0 9 14 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 6 3 2 0 11 0 0 2 8 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 121 170 105
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 122 83 201
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 134 186 119
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 6 (6.12%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 9 (9.18%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 4 7 4 2 7 2 7 1 1 0 0 2 1 3 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 1 4 4 0 0 3 1 0 1 1 0 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 0 0 2 6 0 0 1 2 1 0 0 1 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 1 0 1 0 0 0 1 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
19 23 31 26
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 25 18 47
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 30 38 24
ND5 (size: 1812 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (4.48%)
Alanine (Ala, A)
n = 35 (5.8%)
Serine (Ser, S)
n = 44 (7.3%)
Threonine (Thr, T)
n = 69 (11.44%)
Cysteine (Cys, C)
n = 7 (1.16%)
Valine (Val, V)
n = 16 (2.65%)
Leucine (Leu, L)
n = 92 (15.26%)
Isoleucine (Ile, I)
n = 59 (9.78%)
Methionine (Met, M)
n = 42 (6.97%)
Proline (Pro, P)
n = 29 (4.81%)
Phenylalanine (Phe, F)
n = 38 (6.3%)
Tyrosine (Tyr, Y)
n = 19 (3.15%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 14 (2.32%)
Glutamic acid (Glu, E)
n = 9 (1.49%)
Asparagine (Asn, N)
n = 32 (5.31%)
Glutamine (Gln, Q)
n = 17 (2.82%)
Histidine (His, H)
n = 15 (2.49%)
Lysine (Lys, K)
n = 19 (3.15%)
Arginine (Arg, R)
n = 8 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
39 20 39 12 19 40 6 14 16 1 5 1 9 1 20 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 5 8 15 12 0 9 6 9 3 5 10 11 3 16
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
27 25 1 6 8 16 2 7 5 11 8 3 1 12 20 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 7 2 5 9 17 2 1 3 4 0 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
101 146 233 124
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
66 165 126 247
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 182 229 165
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.37%)
Alanine (Ala, A)
n = 8 (4.6%)
Serine (Ser, S)
n = 12 (6.9%)
Threonine (Thr, T)
n = 5 (2.87%)
Cysteine (Cys, C)
n = 1 (0.57%)
Valine (Val, V)
n = 24 (13.79%)
Leucine (Leu, L)
n = 22 (12.64%)
Isoleucine (Ile, I)
n = 14 (8.05%)
Methionine (Met, M)
n = 12 (6.9%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 9 (5.17%)
Tyrosine (Tyr, Y)
n = 12 (6.9%)
Tryptophan (Trp, W)
n = 5 (2.87%)
Aspartic acid (Asp, D)
n = 4 (2.3%)
Glutamic acid (Glu, E)
n = 10 (5.75%)
Asparagine (Asn, N)
n = 4 (2.3%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.57%)
Arginine (Arg, R)
n = 3 (1.72%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 0 6 0 0 0 2 10 0 0 14 2 4 4 9 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 0 3 0 3 2 13 1 2 9 3 0 0 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 4 0 1 2 4 1 12 0 4 10 4 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 4 6 4 0 0 1 2 0 0 1 1 0 0 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 8 42 54
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 23 31 81
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 4 33 91
Total protein-coding genes (size: 11395 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 207 (5.45%)
Alanine (Ala, A)
n = 228 (6.01%)
Serine (Ser, S)
n = 278 (7.32%)
Threonine (Thr, T)
n = 349 (9.19%)
Cysteine (Cys, C)
n = 23 (0.61%)
Valine (Val, V)
n = 160 (4.21%)
Leucine (Leu, L)
n = 615 (16.2%)
Isoleucine (Ile, I)
n = 338 (8.9%)
Methionine (Met, M)
n = 251 (6.61%)
Proline (Pro, P)
n = 209 (5.51%)
Phenylalanine (Phe, F)
n = 222 (5.85%)
Tyrosine (Tyr, Y)
n = 138 (3.64%)
Tryptophan (Trp, W)
n = 101 (2.66%)
Aspartic acid (Asp, D)
n = 63 (1.66%)
Glutamic acid (Glu, E)
n = 85 (2.24%)
Asparagine (Asn, N)
n = 171 (4.5%)
Glutamine (Gln, Q)
n = 93 (2.45%)
Histidine (His, H)
n = 104 (2.74%)
Lysine (Lys, K)
n = 90 (2.37%)
Arginine (Arg, R)
n = 63 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
214 124 218 93 92 235 34 140 80 13 55 25 66 14 116 106
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
33 7 16 60 87 76 5 50 62 67 28 57 67 80 5 72
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
115 153 9 52 67 90 9 25 35 90 48 19 21 88 83 42
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
62 64 21 31 32 81 9 12 19 31 1 1 0 4 4 82
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
743 923 1260 871
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
455 1004 752 1586
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
225 1040 1468 1064 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​y​g​a​t​h​r​i​x​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ n​e​m​a​e​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.